INNOVATIVE INCISIONS
At UF, precision medicine and AI advance transplantation
THEN YOU LEARN HOW TO DO IT BETTER.

hen it comes to transplant quality, the Scientific Registry of Transplant Recipients has consistently evaluated UF Health Shands Hospital as a top destination for patients seeking high-quality care and outcomes. Comparable to a comprehensive report card, the registry assesses programs based on critical factors essential to patients seeking organ transplants, including one-year survival rates, transplant waiting times, and patient survival rates while on the transplant list.
Now, researchers and surgeons at the University of Florida are working hand in scalpel to leverage their expertise and dedication to tackle new challenges, like long-term outcomes, immunosuppression, and other problems that have persisted across the field of transplantation despite its progress over the past several decades.

“In many ways, you could say the field of transplantation plateaued for some time,” said Ali Zarrinpar, MD, PhD, a liver transplant surgeon and professor in the College of Medicine Department of Surgery. “I think the field has matured to a point where we know how to do a lot, and we’ve optimized many of those processes. Now many of us are looking toward what’s next — and deciding how we want to get there.”
What’s next for patients undergoing a transplant differs with respect to the organ in question. Lung transplantation, for example, carries idiosyncratic problems unique to an organ that is constantly exposed to outside elements and stimuli, hastening its rejection by the recipient’s immune system. Other solid organs commonly transplanted, like hearts, livers, and kidneys, have an average life expectancy of 10 years — almost double those of lungs.
“Lung transplant has one of the worst outcomes of all the solid organ transplants,” said Ashish K. Sharma, MD, PhD, a vascular surgeon and associate professor in the Department of Surgery, whose lab is dedicated to improving primary graft dysfunction, organ preservation, and ischemia-reperfusion injury across lung transplant recipients. “The truth of the matter is that almost 70% of lung transplant patients will die in 10 years, and half of them die at the five-year mark. Our lab’s goal is to delve into the problems behind why this area of transplantation has, historically, struggled so much.”
One piece of the puzzle is the donor shortage. For some organs, living donors are more of a readily available solution. Take the kidney, for instance: A person can donate one of their bean-shaped organs to a friend, family member, or stranger and observe no changes to their day-to-day functioning after the donation.
But other organs, like the lungs, are in shorter supply. Thanks to the advent of ex vivo lung perfusion, the quantity has increased slightly.The therapy, applied to donor lungs outside of the body before transplantation, improves organ quality and makes lungs that were previously unsuitable safe for implantation.
However, Sharma’s chief focus is one the specialty has grappled with since the first lung transplant in 1963: the issue of primary graft dysfunction, or why lung transplants have such poor long-term results in the first place. Every year, 70 to 80 lung transplants are performed at UF Health Shands Hospital.
“That makes us one of the top centers in the country,” he said. “And with that comes its own layer of expertise and infrastructure where we can conduct robust, translational research.”

The UF Health Shands Transplant Center has achieved outstanding outcomes across multiple organ types, as reported by the Scientific Registry of Transplant Recipients.
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LIVER:
No. 1 in the nation (2023-2024)
99% estimated probability of patient survival post-transplant (2023-2024)
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KIDNEY:
Best in Florida and No. 2 in the nation (2024)
One of lowest rates of delayed graft failure — less than 12.8%, compared with national average of 33% (2024)
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LUNG:
No. 4 in the nation for one-year survival (2024)
No. 1 in three-year survival across 76 U.S. lung transplant programs (2024)
Typically, within the first three days following a lung transplant, graft dysfunction occurs because of a process called ischemia reperfusion injury, in which blood supply that returns to tissue after a period of deprivation results in damage due to a lack of oxygen. This event dictates the outcomes of whether the patient will develop chronic graft dysfunction or survive. The purpose of Sharma’s lab is to understand how researchers and clinicians can mitigate the chances of both primary graft dysfunction and ischemia perfusion injury early on — ideally within the first 72 hours.
To delve deeper, Sharma and his team conduct transbronchial biopsies from the lung tissue before and after transplant, analyzing lipids and biomarkers to try to identify the turning point. One area of potential investment, Sharma said, is the humble omega-3 fatty acid, which human bodies metabolize into specialized pro-resolving mediators. They typically occur in very low quantities in the lungs but add protective qualities — so much so, that Sharma and his team are noting an association between the lipids and outcomes of transplant patients.

Another respected foe is cell death, or apoptosis. If the research team can identify a means of staving it off, Sharma said, patient outcomes could also improve.
“As you can imagine, there’s a turnover of cells all the time, especially when there’s a transplant,” he said. “A lot of cells die because it’s a foreign graft for the recipient’s body. It’s a new lung coming in, and that is taken as a foreign object, and there’s a subsequent immune response. And because of that, there’s a lot of apoptosis.”
In a way, the cell death is a precursor to a doomed domino effect. Typically, the body clears away dead cells through efferocytosis. But in the case of a lung transplant, the process stutters — and eventually stops. The culprit? A receptor, called tike, that is cleaved, leading to a communication gap that prevents the garbage trucks from cleaning up all the dead cells.
“If we can find a drug that will repair that gap in the process, it would enable some of the inflammation to subside,” Sharma said. “Instead, the dead cells accumulate, inflammation persists, and so on.”
While some challenges in transplantation are unique to the particular organ, others extend to all. One area ripe for problem-solving is the question of immunosuppressants.
For any transplant, an organ recipient’s immune system experiences a rude awakening, fighting off what it perceives as a foreign body. Immunosuppressants work — but sometimes, they work too well, quashing the body’s response to everything, including interlopers it should recognize as legitimate adversaries, like an infection or cancer.

Our team is dedicated to the idea that one of the biggest obstacles we face is optimizing immunosuppression. These drugs have very narrow therapeutic ranges, and it can be difficult to determine the right dose or combination for any individual patient.”
Too much can lead to direct organ toxicity or to an immune system that cannot fight infections or malignancy — but too little can put a patient at risk of rejection and graft injury. In this case, researchers believe artificial intelligence can lend a helping hand in the form of platform phenotypic personalized medicine, or PPM. In theory the process will rely on non-linear regression to mathematically relate each patient’s prescribed immunosuppressant dosing with quantitative measurements reflective of their phenotype — and their subsequent graft health.
“In other words, PPM will allow us to identify a functional relationship between a patient’s immunosuppressive treatment and response,” Duarte said. “Once we measure this relationship, we can optimize the phenotypic function to identify a combination of doses associated with the desired clinical outcome minimization of allograft injury.”
“When it comes to immunosuppression, this process is patient-specific and time-dependent on the clinical inputs we use,” Zarrinpar said.
In both modeling and optimization processes, research values are constantly updated, allowing the phenotypic response function to change and reflect fluctuations in a patient’s immunosuppressive needs over time. But ultimately, it has the potential to revolutionize the way clinicians and researchers approach the question of immunosuppression — and long-term patient health.
“I think every transplant researcher is invested in problem-solving these questions that arise as we get to know the science better year after year,” Sharma said. “And in many ways, it is how we show our commitment to our patients, who are at the heart of these questions we hope to continue to answer.”

Darwin Dias nearly died from COVID-19 complications in 2021. Facing multi-organ failure, his only chance for survival was an Extracorporeal Membrane Oxygenation machine, or ECMOAfter being airlifted from Orlando to UF Health Shands Hospital in Gainesville, he remained connected to ECMO for 54 days and received treatment from lung transplant specialist Abbas Shahmohammadi, MD.
Recently, Dias pledged $500,000 to fund critical research within the abdominal transplant unit, where Shahmohammadi now serves as director.
“I have a forever bond with the hospital,” Dias said. “I will always give all the support I can to show how grateful I am for being reborn there.”
contact benjamin.valentine@ufhealth.org
or 352-627-9047.